Package index • nowcastdatasets

Influenza & Respiratory

Datasets for influenza and other respiratory illness nowcasting.

flu_h7n9_china_2013: Influenza A H7N9 outbreak in China, 2013
flusight: USA's National Healthcare Safety Network (NHSN) Weekly Hospital Respiratory Data from FluSight, 2022 – 2026
germany_covid19_hosp: Incident COVID-19 hospitalizations indexed by the date of positive test (reference date) and report date from Germany in 2021 and 2022.
sari_bh: Severe Acute Respiratory Illness data from Belo Horizonte (Brazil), 2020-2022

Outbreak line-lists

Individual-level line-list datasets from historical outbreaks.

denguedat: Dengue fever individual-level reporting data from Puerto Rico (USA) 1990-2010
ebola_sierraleone_2014: Ebola virus disease outbreak in Sierra Leone, 2014–2015
measles_hagelloch_1861: Measles outbreak in Hagelloch, (Germany) 1861
mers_korea_2015: Middle East Respiratory Syndrome (MERS-CoV) outbreak in South Korea, 2015
mpoxdat: Mpox reporting data from the 2022 New York City (USA) outbreak