Collection of datasets for benchmarking and evaluating nowcasting models.
Installation
You can install via pak:
#install.packages("pak") # <- Uncomment if not installed
pak::pkg_install("epinowcast/nowcastdatasets")Datasets
The following datasets are currently available:
data(package="nowcastdatasets")| Item | Title |
|---|---|
| denguedat | Dengue fever individual-level reporting data from Puerto Rico (USA) 1990-2010 |
| ebola_sierraleone_2014 | Ebola virus disease outbreak in Sierra Leone, 2014-2015 |
| flu_h7n9_china_2013 | Influenza A H7N9 outbreak in China, 2013 |
| flusight | USA’s National Healthcare Safety Network (NHSN) Weekly Hospital Respiratory Data from FluSight, 2022 - 2026 |
| germany_covid19_hosp | Incident COVID-19 hospitalizations indexed by the date of positive test (reference date) and report date from Germany in 2021 and 2022. |
| measles_hagelloch_1861 | Measles outbreak in Hagelloch, (Germany) 1861 |
| mers_korea_2015 | Middle East Respiratory Syndrome (MERS-CoV) outbreak in South Korea, 2015 |
| mpoxdat | Mpox reporting data from the 2022 New York City (USA) outbreak |
| sari_bh | Severe Acute Respiratory Illness data from Belo Horizonte (Brazil), 2020-2022 |
Data sets in nowcastdatasets
Contribute
See DATASETS.md for more information on how to contribute a dataset.